J4_7OSM_003

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

7OSM|1|25S|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OSM_003 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.1151

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|U|112
7OSM|1|25S|C|113
*
7OSM|1|25S|G|267
7OSM|1|25S|A|268
7OSM|1|25S|G|269
7OSM|1|25S|U|270
7OSM|1|25S|C|271
7OSM|1|25S|G|272
*
7OSM|1|25S|C|293
7OSM|1|25S|U|294
7OSM|1|25S|A|295
7OSM|1|25S|A|296
7OSM|1|25S|G|297
7OSM|1|25S|U|298
7OSM|1|25S|G|299
*
7OSM|1|25S|U|316
7OSM|1|25S|A|317
7OSM|1|25S|A|318
7OSM|1|25S|A|319

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL13

60S ribosomal protein L13

Chain eL15

60S ribosomal protein L15-A

Chain eL36

60S ribosomal protein L36-A

Chain uL29

BJ4_G0044250.mRNA.1.CDS.1