J4_7OSM_004

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

7OSM|1|25S|A|1452, 7OSM|1|25S|U|1455, 7OSM|1|25S|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OSM_004 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.0748

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7OSM|1|25S|C|1451
7OSM|1|25S|A|1452
7OSM|1|25S|A|1453
7OSM|1|25S|A|1454
7OSM|1|25S|U|1455
7OSM|1|25S|A|1456
7OSM|1|25S|U|1457
*
7OSM|1|25S|A|1475
7OSM|1|25S|G|1476
*
7OSM|1|25S|U|1877
7OSM|1|25S|G|1878
7OSM|1|25S|A|1879
7OSM|1|25S|U|1880
*
7OSM|1|25S|A|2352
7OSM|1|25S|G|2353

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL31

BJ4_G0008090.mRNA.1.CDS.1

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1