J4_7OSM_006

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OSM_006 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.2018

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|25S|G|1674
7OSM|1|25S|G|1675
*
7OSM|1|25S|C|1693
7OSM|1|25S|U|1694
*
7OSM|1|25S|A|1752
7OSM|1|25S|G|1753
*
7OSM|1|25S|U|1772
7OSM|1|25S|C|1773

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL22

60S ribosomal protein L22-A

Chain eL34

60S ribosomal protein L34-A

Chain eL38

BJ4_G0032190.mRNA.1.CDS.1