J4_7OSM_010

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OSM_010 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0861

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OSM|1|25S|U|3010
7OSM|1|25S|A|3011
7OSM|1|25S|A|3012
*
7OSM|1|25S|U|3042
7OSM|1|25S|C|3043
*
7OSM|1|25S|G|3098
7OSM|1|25S|C|3099
7OSM|1|25S|U|3100
*
7OSM|1|25S|A|3134
7OSM|1|25S|U|3135
7OSM|1|25S|G|3136

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL13

60S ribosomal protein L16-A

Chain uL14

60S ribosomal protein L23-B

Chain uL3

60S ribosomal protein L3