3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UAA*UC*GCU*AUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7OSM_010 not in the Motif Atlas
Homologous match to J4_8P9A_020
Geometric discrepancy: 0.0861
The information below is about J4_8P9A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_37757.1
Basepair signature
cWW-tSS-cWW-cWW-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7OSM|1|25S|U|3010
7OSM|1|25S|A|3011
7OSM|1|25S|A|3012
*
7OSM|1|25S|U|3042
7OSM|1|25S|C|3043
*
7OSM|1|25S|G|3098
7OSM|1|25S|C|3099
7OSM|1|25S|U|3100
*
7OSM|1|25S|A|3134
7OSM|1|25S|U|3135
7OSM|1|25S|G|3136

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain uL13
60S ribosomal protein L16-A
Chain uL14
60S ribosomal protein L23-B
Chain uL3
60S ribosomal protein L3

Coloring options:


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