J4_7OTC_008

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OTC_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0584

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7OTC|1|A|A|1772
7OTC|1|A|A|1773
7OTC|1|A|C|1774
7OTC|1|A|U|1775
7OTC|1|A|G|1776
*
7OTC|1|A|C|1788
7OTC|1|A|A|1789
7OTC|1|A|C|1790
7OTC|1|A|A|1791
7OTC|1|A|G|1792
*
7OTC|1|A|U|1827
7OTC|1|A|G|1828
7OTC|1|A|A|1829
7OTC|1|A|C|1830
*
7OTC|1|A|G|1975
7OTC|1|A|U|1976
7OTC|1|A|A|1977
7OTC|1|A|A|1978
7OTC|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2