J4_7OW7_009

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(OMU)G

Length

21 nucleotides

Bulged bases

7OW7|1|A|OMU|3818

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7OW7_009 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1178

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7OW7|1|A|C|3696
7OW7|1|A|U|3697
7OW7|1|A|G|3698
*
7OW7|1|A|C|3752
7OW7|1|A|G|3753
*
7OW7|1|A|C|3771
7OW7|1|A|U|3772
7OW7|1|A|U|3773
7OW7|1|A|A|3774
7OW7|1|A|A|3775
7OW7|1|A|G|3776
7OW7|1|A|G|3777
7OW7|1|A|U|3778
7OW7|1|A|A|3779
7OW7|1|A|G|3780
*
7OW7|1|A|U|3814
7OW7|1|A|G|3815
7OW7|1|A|A|3816
7OW7|1|A|A|3817
7OW7|1|A|OMU|3818
7OW7|1|A|G|3819

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8