J4_7OW7_012
3D structure
- PDB id
- 7OW7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EIF6-bound large subunit of the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUA(A2M)*(OMU)C*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 7OW7|1|A|U|4677
- QA status
- Modified nucleotides: A2M, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OW7_012 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.0514
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OW7|1|A|G|4587
7OW7|1|A|U|4588
7OW7|1|A|A|4589
7OW7|1|A|A2M|4590
*
7OW7|1|A|OMU|4620
7OW7|1|A|C|4621
*
7OW7|1|A|G|4676
7OW7|1|A|U|4677
7OW7|1|A|G|4678
*
7OW7|1|A|C|4712
7OW7|1|A|G|4713
7OW7|1|A|C|4714
7OW7|1|A|C|4715
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3 isoform a
- Chain I
- 60S ribosomal protein L13a
- Chain Q
- 60S ribosomal protein L23
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