J4_7OYD_004
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7OYD|1|5|C|2441
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OYD_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0863
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|G|2410
7OYD|1|5|G|2411
7OYD|1|5|U|2412
7OYD|1|5|U|2413
7OYD|1|5|C|2414
*
7OYD|1|5|G|2438
7OYD|1|5|G|2439
7OYD|1|5|U|2440
7OYD|1|5|C|2441
7OYD|1|5|A|2442
7OYD|1|5|G|2443
*
7OYD|1|5|U|2542
7OYD|1|5|C|2543
*
7OYD|1|5|G|2781
7OYD|1|5|G|2782
7OYD|1|5|C|2783
7OYD|1|5|C|2784
7OYD|1|5|G|2785
7OYD|1|5|U|2786
7OYD|1|5|A|2787
7OYD|1|5|C|2788
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19
- Chain X
- RPL23A
- Chain g
- 60S ribosomal protein L34
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain k
- eL38
- Chain l
- eL39
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