J4_7OYD_006
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OYD_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0939
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OYD|1|5|G|3638
7OYD|1|5|A|3639
7OYD|1|5|C|3640
7OYD|1|5|U|3641
7OYD|1|5|G|3642
*
7OYD|1|5|C|3654
7OYD|1|5|A|3655
7OYD|1|5|A|3656
7OYD|1|5|A|3657
7OYD|1|5|G|3658
*
7OYD|1|5|U|3694
7OYD|1|5|G|3695
7OYD|1|5|A|3696
7OYD|1|5|U|3697
7OYD|1|5|U|3698
*
7OYD|1|5|A|3825
7OYD|1|5|U|3826
7OYD|1|5|G|3827
7OYD|1|5|A|3828
7OYD|1|5|A2M|3829
7OYD|1|5|C|3830
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Ribosomal protein L8
- Chain n
- 60s ribosomal protein l41
- Chain p
- eL43
Coloring options: