J4_7OYD_012
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7OYD|1|9|A|672, 7OYD|1|9|A|1083, 7OYD|1|9|C|1085, 7OYD|1|9|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7OYD_012 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1317
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|9|A|671
7OYD|1|9|A|672
7OYD|1|9|G|673
*
7OYD|1|9|C|1032
7OYD|1|9|G|1033
7OYD|1|9|A|1034
7OYD|1|9|A|1035
7OYD|1|9|A|1036
7OYD|1|9|G|1037
*
7OYD|1|9|C|1078
7OYD|1|9|C|1079
7OYD|1|9|A|1080
7OYD|1|9|PSU|1081
7OYD|1|9|A|1082
7OYD|1|9|A|1083
7OYD|1|9|A|1084
7OYD|1|9|C|1085
7OYD|1|9|G|1086
7OYD|1|9|A|1087
7OYD|1|9|U|1088
7OYD|1|9|G|1089
*
7OYD|1|9|U|1160
7OYD|1|9|U|1161
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- RPS26
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- uS15
- Chain OO
- RPS14
- Chain WW
- Ribosomal protein S15a
- Chain XX
- RPS23
- Chain n
- 60s ribosomal protein l41
- Chain p
- eL43
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