J4_7P48_002

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7P48|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P48_002 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1195

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7P48|1|A|C|271
7P48|1|A|C|272
*
7P48|1|A|G|416
7P48|1|A|A|417
7P48|1|A|G|418
7P48|1|A|U|419
7P48|1|A|A|420
7P48|1|A|C|421
*
7P48|1|A|G|445
7P48|1|A|G|446
7P48|1|A|A|447
7P48|1|A|A|448
7P48|1|A|U|449
7P48|1|A|C|450
7P48|1|A|U|451
7P48|1|A|G|452
*
7P48|1|A|U|467
7P48|1|A|A|468
7P48|1|A|A|469
7P48|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L28