J4_7P48_008

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P48_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.093

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7P48|1|A|G|1799
7P48|1|A|A|1800
7P48|1|A|C|1801
7P48|1|A|U|1802
7P48|1|A|G|1803
*
7P48|1|A|C|1815
7P48|1|A|A|1816
7P48|1|A|C|1817
7P48|1|A|A|1818
7P48|1|A|G|1819
*
7P48|1|A|U|1854
7P48|1|A|G|1855
7P48|1|A|A|1856
7P48|1|A|C|1857
*
7P48|1|A|G|2002
7P48|1|A|U|2003
7P48|1|A|A|2004
7P48|1|A|A|2005
7P48|1|A|C|2006

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2