J4_7P7Q_001

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7P7Q|1|A|C|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7P7Q_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1294

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7P7Q|1|A|C|270
7P7Q|1|A|C|271
*
7P7Q|1|A|G|409
7P7Q|1|A|A|410
7P7Q|1|A|G|411
7P7Q|1|A|U|412
7P7Q|1|A|A|413
7P7Q|1|A|C|414
*
7P7Q|1|A|G|438
7P7Q|1|A|G|439
7P7Q|1|A|A|440
7P7Q|1|A|A|441
7P7Q|1|A|U|442
7P7Q|1|A|C|443
7P7Q|1|A|C|444
7P7Q|1|A|G|445
*
7P7Q|1|A|C|460
7P7Q|1|A|A|461
7P7Q|1|A|A|462
7P7Q|1|A|G|463

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L28