J4_7PIA_014

3D structure

PDB id

7PIA (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7PIA|1|3|U|441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PIA_014 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4051

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PIA|1|3|C|272
7PIA|1|3|C|273
*
7PIA|1|3|G|408
7PIA|1|3|A|409
7PIA|1|3|G|410
7PIA|1|3|U|411
7PIA|1|3|A|412
7PIA|1|3|G|413
*
7PIA|1|3|U|435
7PIA|1|3|G|436
7PIA|1|3|A|437
7PIA|1|3|A|438
7PIA|1|3|U|439
7PIA|1|3|C|440
7PIA|1|3|U|441
7PIA|1|3|G|442
*
7PIA|1|3|U|457
7PIA|1|3|A|458
7PIA|1|3|A|459
7PIA|1|3|G|460

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28