J4_7PIR_009

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUGU*AGG*CUAUUA*UAUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PIR_009 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.5108

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7PIR|1|3|G|2651
7PIR|1|3|U|2652
7PIR|1|3|G|2653
7PIR|1|3|U|2654
*
7PIR|1|3|A|2682
7PIR|1|3|G|2683
7PIR|1|3|G|2684
*
7PIR|1|3|C|2739
7PIR|1|3|U|2740
7PIR|1|3|A|2741
7PIR|1|3|U|2742
7PIR|1|3|U|2743
7PIR|1|3|A|2744
*
7PIR|1|3|U|2776
7PIR|1|3|A|2777
7PIR|1|3|U|2778
7PIR|1|3|C|2779

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14