J4_7PIR_016

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7PIR|1|3|U|441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PIR_016 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.2679

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7PIR|1|3|C|272
7PIR|1|3|C|273
*
7PIR|1|3|G|408
7PIR|1|3|A|409
7PIR|1|3|G|410
7PIR|1|3|U|411
7PIR|1|3|A|412
7PIR|1|3|G|413
*
7PIR|1|3|U|435
7PIR|1|3|G|436
7PIR|1|3|A|437
7PIR|1|3|A|438
7PIR|1|3|U|439
7PIR|1|3|C|440
7PIR|1|3|U|441
7PIR|1|3|G|442
*
7PIR|1|3|U|457
7PIR|1|3|A|458
7PIR|1|3|A|459
7PIR|1|3|G|460

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28