J4_7PJU_007

3D structure

PDB id

7PJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJU_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0638

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PJU|1|A|A|1772
7PJU|1|A|A|1773
7PJU|1|A|C|1774
7PJU|1|A|U|1775
7PJU|1|A|G|1776
*
7PJU|1|A|C|1788
7PJU|1|A|A|1789
7PJU|1|A|C|1790
7PJU|1|A|A|1791
7PJU|1|A|G|1792
*
7PJU|1|A|U|1827
7PJU|1|A|G|1828
7PJU|1|A|A|1829
7PJU|1|A|C|1830
*
7PJU|1|A|G|1975
7PJU|1|A|U|1976
7PJU|1|A|A|1977
7PJU|1|A|A|1978
7PJU|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA