J4_7PJV_007

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJV_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0624

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PJV|1|A|A|1772
7PJV|1|A|A|1773
7PJV|1|A|C|1774
7PJV|1|A|U|1775
7PJV|1|A|G|1776
*
7PJV|1|A|C|1788
7PJV|1|A|A|1789
7PJV|1|A|C|1790
7PJV|1|A|A|1791
7PJV|1|A|G|1792
*
7PJV|1|A|U|1827
7PJV|1|A|G|1828
7PJV|1|A|A|1829
7PJV|1|A|C|1830
*
7PJV|1|A|G|1975
7PJV|1|A|U|1976
7PJV|1|A|A|1977
7PJV|1|A|A|1978
7PJV|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2