J4_7PJW_014

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJW_014 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0964

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PJW|1|A|A|1772
7PJW|1|A|A|1773
7PJW|1|A|C|1774
7PJW|1|A|U|1775
7PJW|1|A|G|1776
*
7PJW|1|A|C|1788
7PJW|1|A|A|1789
7PJW|1|A|C|1790
7PJW|1|A|A|1791
7PJW|1|A|G|1792
*
7PJW|1|A|U|1827
7PJW|1|A|G|1828
7PJW|1|A|A|1829
7PJW|1|A|C|1830
*
7PJW|1|A|G|1975
7PJW|1|A|U|1976
7PJW|1|A|A|1977
7PJW|1|A|A|1978
7PJW|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA