J4_7PJX_007

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJX_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0624

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7PJX|1|A|A|1772
7PJX|1|A|A|1773
7PJX|1|A|C|1774
7PJX|1|A|U|1775
7PJX|1|A|G|1776
*
7PJX|1|A|C|1788
7PJX|1|A|A|1789
7PJX|1|A|C|1790
7PJX|1|A|A|1791
7PJX|1|A|G|1792
*
7PJX|1|A|U|1827
7PJX|1|A|G|1828
7PJX|1|A|A|1829
7PJX|1|A|C|1830
*
7PJX|1|A|G|1975
7PJX|1|A|U|1976
7PJX|1|A|A|1977
7PJX|1|A|A|1978
7PJX|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA