J4_7PJZ_001

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7PJZ|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7PJZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.215

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7PJZ|1|A|C|268
7PJZ|1|A|C|269
*
7PJZ|1|A|G|370
7PJZ|1|A|A|371
7PJZ|1|A|G|372
7PJZ|1|A|U|373
7PJZ|1|A|A|374
7PJZ|1|A|G|375
*
7PJZ|1|A|U|399
7PJZ|1|A|G|400
7PJZ|1|A|A|401
7PJZ|1|A|A|402
7PJZ|1|A|U|403
7PJZ|1|A|A|404
7PJZ|1|A|U|405
7PJZ|1|A|G|406
*
7PJZ|1|A|C|421
7PJZ|1|A|A|422
7PJZ|1|A|A|423
7PJZ|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28