J4_7PKQ_003
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCG*CGUAAG*CCGUCAACACAU*AC
- Length
- 23 nucleotides
- Bulged bases
- 7PKQ|1|3|C|88, 7PKQ|1|3|U|265, 7PKQ|1|3|A|267, 7PKQ|1|3|A|270, 7PKQ|1|3|A|272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PKQ_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.2504
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7PKQ|1|3|G|87
7PKQ|1|3|C|88
7PKQ|1|3|G|89
*
7PKQ|1|3|C|216
7PKQ|1|3|G|217
7PKQ|1|3|U|218
7PKQ|1|3|A|219
7PKQ|1|3|A|220
7PKQ|1|3|G|221
*
7PKQ|1|3|C|262
7PKQ|1|3|C|263
7PKQ|1|3|G|264
7PKQ|1|3|U|265
7PKQ|1|3|C|266
7PKQ|1|3|A|267
7PKQ|1|3|A|268
7PKQ|1|3|C|269
7PKQ|1|3|A|270
7PKQ|1|3|C|271
7PKQ|1|3|A|272
7PKQ|1|3|U|273
*
7PKQ|1|3|A|294
7PKQ|1|3|C|295
Current chains
- Chain 3
- S3 rRNA
Nearby chains
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain h
- uS8m
- Chain l
- uS12m
- Chain o
- uS15m
- Chain q
- uS17m
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