J4_7PWG_007
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CCACG*CCGAC*GCC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7PWG|1|1|C|2080
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PWG_007 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.23
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7PWG|1|1|C|2077
7PWG|1|1|C|2078
7PWG|1|1|A|2079
7PWG|1|1|C|2080
7PWG|1|1|G|2081
*
7PWG|1|1|C|2135
7PWG|1|1|C|2136
7PWG|1|1|G|2137
7PWG|1|1|A|2138
7PWG|1|1|C|2139
*
7PWG|1|1|G|2163
7PWG|1|1|C|2164
7PWG|1|1|C|2165
*
7PWG|1|1|G|2174
7PWG|1|1|G|2175
7PWG|1|1|G|2176
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain D
- Ribosomal protein L5
- Chain T
- Ribosomal protein L21
- Chain o
- Ribosomal protein L44
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