J4_7PWO_003
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGUUC*G(OMG)UGAC*GG*CGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7PWO|1|1|G|1206
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7PWO_003 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.1362
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PWO|1|1|G|1175
7PWO|1|1|G|1176
7PWO|1|1|U|1177
7PWO|1|1|U|1178
7PWO|1|1|C|1179
*
7PWO|1|1|G|1203
7PWO|1|1|OMG|1204
7PWO|1|1|U|1205
7PWO|1|1|G|1206
7PWO|1|1|A|1207
7PWO|1|1|C|1208
*
7PWO|1|1|G|1286
7PWO|1|1|G|1287
*
7PWO|1|1|C|1463
7PWO|1|1|G|1464
7PWO|1|1|C|1465
7PWO|1|1|C|1466
7PWO|1|1|G|1467
7PWO|1|1|U|1468
7PWO|1|1|A|1469
7PWO|1|1|C|1470
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 42
- rRNA 5.8S
- Chain X2
- Ribosomal protein L23A
- Chain g2
- Ribosomal protein L34
- Chain h2
- Ribosomal protein L35
- Chain j2
- Ribosomal protein L37
- Chain k2
- Ribosomal L38e
- Chain l2
- Ribosomal protein L39
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