J4_7Q08_005

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Q08_005 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.0812

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7Q08|1|1|G|1670
7Q08|1|1|G|1671
*
7Q08|1|1|C|1689
7Q08|1|1|U|1690
*
7Q08|1|1|A|1748
7Q08|1|1|G|1749
*
7Q08|1|1|U|1768
7Q08|1|1|C|1769

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

Ribosomal 60S subunit protein L22B

Chain AH

Ribosomal 60S subunit protein L34B

Chain AL

Ribosomal 60S subunit protein L38