J4_7QCA_006

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AG*UU*AC*GU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QCA_006 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.2976

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|A|1299
7QCA|1|L50|G|1300
*
7QCA|1|L50|U|1318
7QCA|1|L50|U|1319
*
7QCA|1|L50|A|1376
7QCA|1|L50|C|1377
*
7QCA|1|L50|G|1392
7QCA|1|L50|U|1393

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LGG

Ribosomal protein L34

Chain LR0

60S ribosomal protein L19

Chain LU0

60S ribosomal protein L22