J4_7QG8_001

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7QG8|1|0|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QG8_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1744

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7QG8|1|0|G|115
7QG8|1|0|A|116
7QG8|1|0|G|117
7QG8|1|0|U|118
7QG8|1|0|A|119
7QG8|1|0|A|120
7QG8|1|0|U|121
7QG8|1|0|G|122
*
7QG8|1|0|U|239
7QG8|1|0|G|240
*
7QG8|1|0|C|286
7QG8|1|0|U|287
7QG8|1|0|A|288
7QG8|1|0|G|289
*
7QG8|1|0|C|311
7QG8|1|0|C|312

Current chains

Chain 0

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S16

Chain J

30S ribosomal protein S17