J4_7QG8_002

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7QG8|1|0|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QG8_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1563

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7QG8|1|0|G|142
7QG8|1|0|A|143
7QG8|1|0|G|144
*
7QG8|1|0|C|178
7QG8|1|0|A|179
7QG8|1|0|U|180
7QG8|1|0|A|181
7QG8|1|0|A|182
7QG8|1|0|C|183
7QG8|1|0|G|184
*
7QG8|1|0|C|193
7QG8|1|0|C|194
7QG8|1|0|A|195
7QG8|1|0|A|196
7QG8|1|0|A|197
7QG8|1|0|G|198
*
7QG8|1|0|U|219
7QG8|1|0|G|220
7QG8|1|0|C|221

Current chains

Chain 0

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20