J4_7QG8_006

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7QG8|1|N|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QG8_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1102

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7QG8|1|N|C|268
7QG8|1|N|C|269
*
7QG8|1|N|G|370
7QG8|1|N|A|371
7QG8|1|N|G|372
7QG8|1|N|U|373
7QG8|1|N|A|374
7QG8|1|N|G|375
*
7QG8|1|N|U|399
7QG8|1|N|G|400
7QG8|1|N|A|401
7QG8|1|N|A|402
7QG8|1|N|U|403
7QG8|1|N|A|404
7QG8|1|N|U|405
7QG8|1|N|G|406
*
7QG8|1|N|C|421
7QG8|1|N|A|422
7QG8|1|N|A|423
7QG8|1|N|G|424

Current chains

Chain N

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L9

Chain k

50S ribosomal protein L28