J4_7QG8_009

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7QG8|1|N|G|1271, 7QG8|1|N|A|1272, 7QG8|1|N|U|1273, 7QG8|1|N|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QG8_009 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0823

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7QG8|1|N|C|1270
7QG8|1|N|G|1271
7QG8|1|N|A|1272
7QG8|1|N|U|1273
7QG8|1|N|A|1274
7QG8|1|N|A|1275
7QG8|1|N|A|1276
*
7QG8|1|N|U|1294
7QG8|1|N|C|1295
*
7QG8|1|N|G|1645
7QG8|1|N|C|1646
7QG8|1|N|U|1647
7QG8|1|N|U|1648
*
7QG8|1|N|A|2009
7QG8|1|N|G|2010

Current chains

Chain N

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L17

Chain f

50S ribosomal protein L22

Chain n

50S ribosomal protein L32