J4_7QGH_001

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7QGH|1|0|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGH_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1745

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7QGH|1|0|G|115
7QGH|1|0|A|116
7QGH|1|0|G|117
7QGH|1|0|U|118
7QGH|1|0|A|119
7QGH|1|0|A|120
7QGH|1|0|U|121
7QGH|1|0|G|122
*
7QGH|1|0|U|239
7QGH|1|0|G|240
*
7QGH|1|0|C|286
7QGH|1|0|U|287
7QGH|1|0|A|288
7QGH|1|0|G|289
*
7QGH|1|0|C|311
7QGH|1|0|C|312

Current chains

Chain 0

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S16

Chain H

30S ribosomal protein S17