J4_7QGH_002

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7QGH|1|0|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGH_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1563

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7QGH|1|0|G|142
7QGH|1|0|A|143
7QGH|1|0|G|144
*
7QGH|1|0|C|178
7QGH|1|0|A|179
7QGH|1|0|U|180
7QGH|1|0|A|181
7QGH|1|0|A|182
7QGH|1|0|C|183
7QGH|1|0|G|184
*
7QGH|1|0|C|193
7QGH|1|0|C|194
7QGH|1|0|A|195
7QGH|1|0|A|196
7QGH|1|0|A|197
7QGH|1|0|G|198
*
7QGH|1|0|U|219
7QGH|1|0|G|220
7QGH|1|0|C|221

Current chains

Chain 0

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S20