J4_7QGH_005

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7QGH|1|N|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGH_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1102

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7QGH|1|N|C|268
7QGH|1|N|C|269
*
7QGH|1|N|G|370
7QGH|1|N|A|371
7QGH|1|N|G|372
7QGH|1|N|U|373
7QGH|1|N|A|374
7QGH|1|N|G|375
*
7QGH|1|N|U|399
7QGH|1|N|G|400
7QGH|1|N|A|401
7QGH|1|N|A|402
7QGH|1|N|U|403
7QGH|1|N|A|404
7QGH|1|N|U|405
7QGH|1|N|G|406
*
7QGH|1|N|C|421
7QGH|1|N|A|422
7QGH|1|N|A|423
7QGH|1|N|G|424

Current chains

Chain N

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L9

Chain k

50S ribosomal protein L28