J4_7QGR_005

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7QGR|1|N|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGR_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1102

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7QGR|1|N|C|268
7QGR|1|N|C|269
*
7QGR|1|N|G|370
7QGR|1|N|A|371
7QGR|1|N|G|372
7QGR|1|N|U|373
7QGR|1|N|A|374
7QGR|1|N|G|375
*
7QGR|1|N|U|399
7QGR|1|N|G|400
7QGR|1|N|A|401
7QGR|1|N|A|402
7QGR|1|N|U|403
7QGR|1|N|A|404
7QGR|1|N|U|405
7QGR|1|N|G|406
*
7QGR|1|N|C|421
7QGR|1|N|A|422
7QGR|1|N|A|423
7QGR|1|N|G|424

Current chains

Chain N

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L9

Chain k

50S ribosomal protein L28