J4_7QGU_001

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

7QGU|1|A|C|452

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1667

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7QGU|1|A|C|271
7QGU|1|A|C|272
*
7QGU|1|A|G|417
7QGU|1|A|A|418
7QGU|1|A|G|419
7QGU|1|A|U|420
7QGU|1|A|A|421
7QGU|1|A|C|422
*
7QGU|1|A|G|446
7QGU|1|A|G|447
7QGU|1|A|A|448
7QGU|1|A|A|449
7QGU|1|A|U|450
7QGU|1|A|C|451
7QGU|1|A|C|452
7QGU|1|A|G|453
*
7QGU|1|A|C|468
7QGU|1|A|A|469
7QGU|1|A|A|470
7QGU|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28