J4_7QGU_011

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_011 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.22

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7QGU|1|A|G|2672
7QGU|1|A|A|2673
7QGU|1|A|G|2674
7QGU|1|A|C|2675
*
7QGU|1|A|G|2703
7QGU|1|A|A|2704
7QGU|1|A|C|2705
*
7QGU|1|A|G|2760
7QGU|1|A|G|2761
7QGU|1|A|A|2762
7QGU|1|A|C|2763
7QGU|1|A|G|2764
*
7QGU|1|A|C|2798
7QGU|1|A|C|2799
7QGU|1|A|C|2800

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14