J4_7QGU_014

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GGG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

7QGU|1|W|A|824

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QGU_014 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.1051

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

7QGU|1|W|G|584
7QGU|1|W|G|585
7QGU|1|W|G|586
*
7QGU|1|W|C|773
7QGU|1|W|G|774
7QGU|1|W|A|775
7QGU|1|W|A|776
7QGU|1|W|A|777
7QGU|1|W|G|778
*
7QGU|1|W|C|819
7QGU|1|W|C|820
7QGU|1|W|G|821
7QGU|1|W|U|822
7QGU|1|W|A|823
7QGU|1|W|A|824
7QGU|1|W|A|825
7QGU|1|W|C|826
7QGU|1|W|G|827
7QGU|1|W|A|828
7QGU|1|W|U|829
7QGU|1|W|G|830
*
7QGU|1|W|C|889
7QGU|1|W|C|890

Current chains

Chain W

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain t

30S ribosomal protein S15