J4_7QIW_005

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GG*UU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QIW_005 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.2239

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|G|1678
7QIW|1|2|G|1679
*
7QIW|1|2|U|1697
7QIW|1|2|U|1698
*
7QIW|1|2|A|1757
7QIW|1|2|G|1758
*
7QIW|1|2|U|1778
7QIW|1|2|C|1779

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain W

60S ribosomal protein eL22

Chain i

60S ribosomal protein eL34

Chain m

60S ribosomal protein L38