J4_7QIW_006

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)UA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QIW_006 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.1822

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|G|2134
7QIW|1|2|A|2135
7QIW|1|2|C|2136
7QIW|1|2|PSU|2137
7QIW|1|2|G|2138
*
7QIW|1|2|C|2150
7QIW|1|2|A|2151
7QIW|1|2|A|2152
7QIW|1|2|A|2153
7QIW|1|2|G|2154
*
7QIW|1|2|U|2189
7QIW|1|2|G|2190
7QIW|1|2|A|2191
7QIW|1|2|U|2192
7QIW|1|2|U|2193
*
7QIW|1|2|A|2320
7QIW|1|2|PSU|2321
7QIW|1|2|U|2322
7QIW|1|2|A|2323
7QIW|1|2|A2M|2324
7QIW|1|2|C|2325

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain q

60S ribosomal protein eL43