J4_7QIZ_003

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAAUAU*AG*CGAU*AG

Length

15 nucleotides

Bulged bases

7QIZ|1|2|A|1463, 7QIZ|1|2|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QIZ_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1696

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|1462
7QIZ|1|2|A|1463
7QIZ|1|2|A|1464
7QIZ|1|2|A|1465
7QIZ|1|2|U|1466
7QIZ|1|2|A|1467
7QIZ|1|2|U|1468
*
7QIZ|1|2|A|1486
7QIZ|1|2|G|1487
*
7QIZ|1|2|C|1883
7QIZ|1|2|G|1884
7QIZ|1|2|A|1885
7QIZ|1|2|U|1886
*
7QIZ|1|2|A|2355
7QIZ|1|2|G|2356

Current chains

Chain 2

25S rRNA

Nearby chains

Chain R

50S ribosomal protein L22, chloroplastic

Chain T

Ribosomal protein L19

Chain f

60S ribosomal protein eL31