J4_7QIZ_004
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7QIZ|1|2|U|1534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QIZ_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0813
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|2|G|1503
7QIZ|1|2|G|1504
7QIZ|1|2|U|1505
7QIZ|1|2|U|1506
7QIZ|1|2|C|1507
*
7QIZ|1|2|G|1531
7QIZ|1|2|G|1532
7QIZ|1|2|U|1533
7QIZ|1|2|U|1534
7QIZ|1|2|A|1535
7QIZ|1|2|G|1536
*
7QIZ|1|2|C|1619
7QIZ|1|2|C|1620
*
7QIZ|1|2|G|1835
7QIZ|1|2|G|1836
7QIZ|1|2|U|1837
7QIZ|1|2|C|1838
7QIZ|1|2|G|1839
7QIZ|1|2|U|1840
7QIZ|1|2|A|1841
7QIZ|1|2|C|1842
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- Ribosomal protein L19
- Chain Z
- Ribosomal_L23eN domain-containing protein
- Chain i
- 60S ribosomal protein eL34
- Chain l
- Ribosomal protein L37
- Chain m
- 60S ribosomal protein L38
- Chain n
- 60S ribosomal protein eL39
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