J4_7QIZ_012
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*(PSU)U
- Length
- 23 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|626, 7QIZ|1|S2|A|1029, 7QIZ|1|S2|C|1031, 7QIZ|1|S2|A|1033
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7QIZ_012 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1484
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|A|625
7QIZ|1|S2|A|626
7QIZ|1|S2|G|627
*
7QIZ|1|S2|C|978
7QIZ|1|S2|G|979
7QIZ|1|S2|A|980
7QIZ|1|S2|A|981
7QIZ|1|S2|A|982
7QIZ|1|S2|G|983
*
7QIZ|1|S2|C|1024
7QIZ|1|S2|C|1025
7QIZ|1|S2|A|1026
7QIZ|1|S2|PSU|1027
7QIZ|1|S2|A|1028
7QIZ|1|S2|A|1029
7QIZ|1|S2|A|1030
7QIZ|1|S2|C|1031
7QIZ|1|S2|G|1032
7QIZ|1|S2|A|1033
7QIZ|1|S2|U|1034
7QIZ|1|S2|G|1035
*
7QIZ|1|S2|PSU|1106
7QIZ|1|S2|U|1107
Current chains
- Chain S2
- 18S
Nearby chains
- Chain CA
- 40S body ribosomal protein uS12
- Chain DA
- 40S ribosomal protein S26
- Chain HA
- 30S ribosomal protein S15, chloroplastic
- Chain IA
- Ribosomal protein S14
- Chain JA
- 40S ribosomal protein S15a-1
- Chain q
- 60S ribosomal protein eL43
- Chain t
- 60S ribosomal protein L41
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: