J4_7QVP_009

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7QVP|1|L5|A|2366, 7QVP|1|L5|U|2369, 7QVP|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|C|2365
7QVP|1|L5|A|2366
7QVP|1|L5|A|2367
7QVP|1|L5|A|2368
7QVP|1|L5|U|2369
7QVP|1|L5|A|2370
7QVP|1|L5|U|2371
*
7QVP|1|L5|A|2389
7QVP|1|L5|G|2390
7QVP|1|L5|G|2391
*
7QVP|1|L5|C|2824
7QVP|1|L5|A|2825
7QVP|1|L5|U|2826
7QVP|1|L5|G|2827
7QVP|1|L5|U|2828
7QVP|1|L5|U|2829
*
7QVP|1|L5|A|3856
7QVP|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31