J4_7QVP_026

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7QVP|1|L6|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7QVP_026 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1401

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7QVP|1|L6|C|3696
7QVP|1|L6|U|3697
7QVP|1|L6|G|3698
*
7QVP|1|L6|C|3752
7QVP|1|L6|G|3753
*
7QVP|1|L6|C|3771
7QVP|1|L6|U|3772
7QVP|1|L6|U|3773
7QVP|1|L6|A|3774
7QVP|1|L6|A|3775
7QVP|1|L6|G|3776
7QVP|1|L6|G|3777
7QVP|1|L6|U|3778
7QVP|1|L6|A|3779
7QVP|1|L6|G|3780
*
7QVP|1|L6|U|3814
7QVP|1|L6|G|3815
7QVP|1|L6|A|3816
7QVP|1|L6|A|3817
7QVP|1|L6|U|3818
7QVP|1|L6|G|3819

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MA

60S ribosomal protein L8

Chain Mn

60S ribosomal protein L41

Chain S3

Small subunit ribosomal RNA; SSU rRNA