J4_7RQ8_012

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

7RQ8|1|1a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQ8_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0937

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7RQ8|1|1a|G|142
7RQ8|1|1a|A|143
7RQ8|1|1a|G|144
*
7RQ8|1|1a|C|178
7RQ8|1|1a|A|179
7RQ8|1|1a|U|180
7RQ8|1|1a|G|181
7RQ8|1|1a|U|182
7RQ8|1|1a|G|183
*
7RQ8|1|1a|C|194
7RQ8|1|1a|A|195
7RQ8|1|1a|A|196
7RQ8|1|1a|A|197
7RQ8|1|1a|G|198
*
7RQ8|1|1a|C|219
7RQ8|1|1a|G|220
7RQ8|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20