J4_7RQC_025

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

7RQC|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7RQC_025 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1087

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7RQC|1|2a|G|142
7RQC|1|2a|A|143
7RQC|1|2a|G|144
*
7RQC|1|2a|C|178
7RQC|1|2a|A|179
7RQC|1|2a|U|180
7RQC|1|2a|G|181
7RQC|1|2a|U|182
7RQC|1|2a|G|183
*
7RQC|1|2a|C|194
7RQC|1|2a|A|195
7RQC|1|2a|A|196
7RQC|1|2a|A|197
7RQC|1|2a|G|198
*
7RQC|1|2a|C|219
7RQC|1|2a|G|220
7RQC|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20