J4_7S0S_003

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

7S0S|1|C|G|1386, 7S0S|1|C|U|1389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S0S_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.5764

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7S0S|1|C|C|1385
7S0S|1|C|G|1386
7S0S|1|C|A|1387
7S0S|1|C|U|1388
7S0S|1|C|U|1389
7S0S|1|C|A|1390
7S0S|1|C|G|1391
*
7S0S|1|C|C|1409
7S0S|1|C|C|1410
*
7S0S|1|C|G|1863
7S0S|1|C|U|1864
7S0S|1|C|A|1865
7S0S|1|C|C|1866
*
7S0S|1|C|G|2233
7S0S|1|C|G|2234

Current chains

Chain C

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain U

50S ribosomal protein L22

Chain c

50S ribosomal protein L32