J4_7S0S_005

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

7S0S|1|C|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S0S_005 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.102

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7S0S|1|C|U|1428
7S0S|1|C|C|1429
*
7S0S|1|C|G|1453
7S0S|1|C|G|1454
7S0S|1|C|U|1455
7S0S|1|C|G|1456
7S0S|1|C|A|1457
7S0S|1|C|G|1458
*
7S0S|1|C|C|1519
7S0S|1|C|C|1520
*
7S0S|1|C|G|1815
7S0S|1|C|C|1816
7S0S|1|C|C|1817
7S0S|1|C|C|1818
7S0S|1|C|G|1819
7S0S|1|C|U|1820
7S0S|1|C|A|1821

Current chains

Chain C

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L23