3D structure

PDB id
7S1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.47 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7S1J_011 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0581
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7S1J|1|I|A|1772
7S1J|1|I|A|1773
7S1J|1|I|C|1774
7S1J|1|I|U|1775
7S1J|1|I|G|1776
*
7S1J|1|I|C|1788
7S1J|1|I|A|1789
7S1J|1|I|C|1790
7S1J|1|I|A|1791
7S1J|1|I|G|1792
*
7S1J|1|I|U|1827
7S1J|1|I|G|1828
7S1J|1|I|A|1829
7S1J|1|I|C|1830
*
7S1J|1|I|G|1975
7S1J|1|I|U|1976
7S1J|1|I|A|1977
7S1J|1|I|A|1978
7S1J|1|I|U|1979

Current chains

Chain I
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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