J4_7S1K_012

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1K_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0557

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7S1K|1|I|A|1772
7S1K|1|I|A|1773
7S1K|1|I|C|1774
7S1K|1|I|U|1775
7S1K|1|I|G|1776
*
7S1K|1|I|C|1788
7S1K|1|I|A|1789
7S1K|1|I|C|1790
7S1K|1|I|A|1791
7S1K|1|I|G|1792
*
7S1K|1|I|U|1827
7S1K|1|I|G|1828
7S1K|1|I|A|1829
7S1K|1|I|C|1830
*
7S1K|1|I|G|1975
7S1K|1|I|U|1976
7S1K|1|I|A|1977
7S1K|1|I|A|1978
7S1K|1|I|U|1979

Current chains

Chain I

23S rRNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2